IL_7LS1_250

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAGUAUG*UGAAACU

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|m2|G|1169
7LS1|1|m2|G|1170
7LS1|1|m2|G|1171
7LS1|1|m2|A|1172
7LS1|1|m2|G|1173
7LS1|1|m2|U|1174
7LS1|1|m2|A|1175
7LS1|1|m2|U|1176
7LS1|1|m2|G|1177
*
7LS1|1|m2|U|1188
7LS1|1|m2|G|1189
7LS1|1|m2|A|1190
7LS1|1|m2|A|1191
7LS1|1|m2|A|1192
7LS1|1|m2|C|1193
7LS1|1|m2|U|1194

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain E3

40S ribosomal protein S23

Chain h2

60S ribosomal protein L41