IL_7LS1_251

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7LS1|1|m2|A|1697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_251 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1587

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7LS1|1|m2|G|1205
7LS1|1|m2|A|1206
*
7LS1|1|m2|U|1696
7LS1|1|m2|A|1697
7LS1|1|m2|C|1698

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A

Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein

Chain F3

40S ribosomal protein S26

Chain J3

40S ribosomal protein S2