IL_7LS1_256

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_256 not in the Motif Atlas

Homologous match to IL_4V88_446

Geometric discrepancy: 0.2036

The information below is about IL_4V88_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7LS1|1|m2|G|1272
7LS1|1|m2|C|1273
7LS1|1|m2|C|1274
*
7LS1|1|m2|G|1512
7LS1|1|m2|U|1513
7LS1|1|m2|C|1514

Current chains

Chain m2

28S rRNA

Nearby chains

Chain H3

40S ribosomal protein S29

Chain U3

Ubiquitin-40S ribosomal protein S27a

Chain v2

40S ribosomal protein S10