IL_7LS1_260
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 7LS1|1|m2|C|1333
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_260 not in the Motif Atlas
- Homologous match to IL_4V88_450
- Geometric discrepancy: 0.1982
- The information below is about IL_4V88_450
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7LS1|1|m2|U|1331
7LS1|1|m2|G|1332
7LS1|1|m2|C|1333
7LS1|1|m2|A|1334
7LS1|1|m2|U|1335
*
7LS1|1|m2|A|1500
7LS1|1|m2|U|1501
7LS1|1|m2|G|1502
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A
- Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain m
- Elongation factor 2
- Chain q2
- 40S ribosomal protein S3
- Chain v2
- 40S ribosomal protein S10
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