IL_7LS1_265
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 7LS1|1|m2|U|1399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_265 not in the Motif Atlas
- Geometric match to IL_5LQO_002
- Geometric discrepancy: 0.2352
- The information below is about IL_5LQO_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
7LS1|1|m2|C|1397
7LS1|1|m2|A|1398
7LS1|1|m2|U|1399
7LS1|1|m2|G|1400
7LS1|1|m2|C|1401
*
7LS1|1|m2|G|1449
7LS1|1|m2|A|1450
7LS1|1|m2|G|1451
7LS1|1|m2|G|1452
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain C3
- 40S ribosomal protein S20
- Chain I3
- Receptor of activated protein C kinase 1
- Chain y2
- 40S ribosomal protein S16
- Chain z2
- 40S ribosomal protein S17
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