IL_7LS1_266

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAA*UA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_266 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.3948

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7LS1|1|m2|U|1402
7LS1|1|m2|A|1403
7LS1|1|m2|A|1404
*
7LS1|1|m2|U|1447
7LS1|1|m2|A|1448

Current chains

Chain m2

28S rRNA

Nearby chains

Chain C3

40S ribosomal protein S20

Chain I3

Receptor of activated protein C kinase 1

Chain y2

40S ribosomal protein S16