IL_7LS1_277

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_277 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.1689

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7LS1|1|m2|U|1716
7LS1|1|m2|A|1717
7LS1|1|m2|C|1718
*
7LS1|1|m2|G|1819
7LS1|1|m2|A|1820
7LS1|1|m2|A|1821

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain E3

40S ribosomal protein S23

Chain h2

60S ribosomal protein L41