IL_7LS1_281
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAGG*CGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_281 not in the Motif Atlas
- Geometric match to IL_2R8S_002
- Geometric discrepancy: 0.2847
- The information below is about IL_2R8S_002
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- No text annotation
- Motif group
- IL_77691.7
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7LS1|1|m2|U|1735
7LS1|1|m2|G|1736
7LS1|1|m2|A|1737
7LS1|1|m2|G|1738
7LS1|1|m2|G|1739
*
7LS1|1|m2|C|1800
7LS1|1|m2|G|1801
7LS1|1|m2|A|1802
7LS1|1|m2|A|1803
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain K3
- 40S ribosomal protein S6
- Chain Q2
- 60S ribosomal protein L24
- Chain u
- 40S ribosomal protein S8
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