IL_7LS1_283
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCU*ACG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_283 not in the Motif Atlas
- Geometric match to IL_4E48_002
- Geometric discrepancy: 0.103
- The information below is about IL_4E48_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
7LS1|1|m2|C|1741
7LS1|1|m2|C|1742
7LS1|1|m2|U|1743
*
7LS1|1|m2|A|1795
7LS1|1|m2|C|1796
7LS1|1|m2|G|1797
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain K3
- 40S ribosomal protein S6
- Chain Q2
- 60S ribosomal protein L24
- Chain u
- 40S ribosomal protein S8
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