IL_7LS1_286

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_286 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.2286

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7LS1|1|m2|C|1753
7LS1|1|m2|C|1754
*
7LS1|1|m2|G|1782
7LS1|1|m2|A|1783
7LS1|1|m2|G|1784

Current chains

Chain m2

28S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain Q2

60S ribosomal protein L24