IL_7LS1_300
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- (PSU)CA(A2M)AGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_300 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.2208
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7LS1|1|A2|PSU|3371
7LS1|1|A2|C|3372
7LS1|1|A2|A|3373
7LS1|1|A2|A2M|3374
7LS1|1|A2|A|3375
7LS1|1|A2|G|3376
7LS1|1|A2|U|3377
*
7LS1|1|A2|A|3388
7LS1|1|A2|A|3389
7LS1|1|A2|U|3390
7LS1|1|A2|G|3391
7LS1|1|A2|A|3392
7LS1|1|A2|A|3393
7LS1|1|A2|G|3394
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain D2
- 60S ribosomal protein L8
- Chain c2
- 60S ribosomal protein L36
- Chain i2
- 60S ribosomal protein L36a
- Chain n2
- Transfer RNA; tRNA
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