IL_7LS1_328

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCUCUGAAU*GCGGGUAAA

Length

19 nucleotides

Bulged bases

7LS1|1|A2|A|3367, 7LS1|1|A2|A|3368, 7LS1|1|A2|U|3401, 7LS1|1|A2|A|3403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|U|3360
7LS1|1|A2|G|3361
7LS1|1|A2|C|3362
7LS1|1|A2|U|3363
7LS1|1|A2|C|3364
7LS1|1|A2|U|3365
7LS1|1|A2|G|3366
7LS1|1|A2|A|3367
7LS1|1|A2|A|3368
7LS1|1|A2|U|3369
*
7LS1|1|A2|G|3396
7LS1|1|A2|C|3397
7LS1|1|A2|G|3398
7LS1|1|A2|G|3399
7LS1|1|A2|G|3400
7LS1|1|A2|U|3401
7LS1|1|A2|A|3402
7LS1|1|A2|A|3403
7LS1|1|A2|A|3404

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain n2

Transfer RNA; tRNA