IL_7LS1_332

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

7LS1|1|m2|U|1018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_332 not in the Motif Atlas

Homologous match to IL_8CRE_432

Geometric discrepancy: 0.2652

The information below is about IL_8CRE_432

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

7LS1|1|m2|G|927
7LS1|1|m2|A|928
7LS1|1|m2|C|929
*
7LS1|1|m2|G|1016
7LS1|1|m2|U|1017
7LS1|1|m2|U|1018
7LS1|1|m2|U|1019

Current chains

Chain m2

28S rRNA

Nearby chains

Chain N3

40S ribosomal protein S13

Chain P3

40S ribosomal protein S15a

Chain S3

40S ribosomal protein S27-like