IL_7LV0_042

3D structure

PDB id

7LV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7LV0|1|1|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LV0_042 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3136

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

7LV0|1|1|G|1087
7LV0|1|1|A|1088
7LV0|1|1|A|1089
7LV0|1|1|A|1090
7LV0|1|1|G|1091
*
7LV0|1|1|C|1100
7LV0|1|1|U|1101
7LV0|1|1|C|1102

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain h

50S ribosomal protein L10

Chain i

50S ribosomal protein L11