IL_7LVK_075

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

7LVK|1|I|A|1938, 7LVK|1|I|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_075 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1509

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

7LVK|1|I|C|1934
7LVK|1|I|G|1935
7LVK|1|I|A|1936
7LVK|1|I|A|1937
7LVK|1|I|A|1938
7LVK|1|I|5MU|1939
7LVK|1|I|U|1940
7LVK|1|I|C|1941
7LVK|1|I|C|1942
7LVK|1|I|U|1943
7LVK|1|I|U|1944
7LVK|1|I|G|1945
*
7LVK|1|I|C|1961
7LVK|1|I|5MC|1962
7LVK|1|I|U|1963
7LVK|1|I|G|1964

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2