IL_7LVK_128

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGC*GUAG

Length

7 nucleotides

Bulged bases

7LVK|1|J|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LVK_128 not in the Motif Atlas

Homologous match to IL_7A0S_112

Geometric discrepancy: 0.2542

The information below is about IL_7A0S_112

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

7LVK|1|J|C|17
7LVK|1|J|G|18
7LVK|1|J|C|19
*
7LVK|1|J|G|64
7LVK|1|J|U|65
7LVK|1|J|A|66
7LVK|1|J|G|67

Current chains

Chain J

5S rRNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA