IL_7M4V_013

3D structure

PDB id

7M4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4V_013 not in the Motif Atlas

Homologous match to IL_4WF9_017

Geometric discrepancy: 0.1048

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

7M4V|1|A|C|562
7M4V|1|A|C|563
7M4V|1|A|U|564
*
7M4V|1|A|A|573
7M4V|1|A|U|574
7M4V|1|A|G|575

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15

Chain P

50S ribosomal protein L20

Chain Q

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32