IL_7M4W_044

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUGAGUAA*UGAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4W_044 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.097

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7M4W|1|A|G|1257
7M4W|1|A|U|1258
7M4W|1|A|G|1259
7M4W|1|A|A|1260
7M4W|1|A|G|1261
7M4W|1|A|U|1262
7M4W|1|A|A|1263
7M4W|1|A|A|1264
*
7M4W|1|A|U|2007
7M4W|1|A|G|2008
7M4W|1|A|A|2009
7M4W|1|A|A|2010
7M4W|1|A|A|2011
7M4W|1|A|U|2012
7M4W|1|A|C|2013

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32