IL_7M4W_045

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4W_045 not in the Motif Atlas

Homologous match to IL_5J7L_290

Geometric discrepancy: 0.1211

The information below is about IL_5J7L_290

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7M4W|1|A|G|1305
7M4W|1|A|G|1306
7M4W|1|A|U|1307
7M4W|1|A|U|1308
*
7M4W|1|A|A|1601
7M4W|1|A|C|1602

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain S

50S ribosomal protein L23