IL_7M4W_105

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAA*UUAG

Length

7 nucleotides

Bulged bases

7M4W|1|B|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4W_105 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.1963

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

7M4W|1|B|C|15
7M4W|1|B|A|16
7M4W|1|B|A|17
*
7M4W|1|B|U|62
7M4W|1|B|U|63
7M4W|1|B|A|64
7M4W|1|B|G|65

Current chains

Chain B

5s ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA