IL_7M4X_012

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAUC

Length

18 nucleotides

Bulged bases

7M4X|1|A|U|503, 7M4X|1|A|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4X_012 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0898

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7M4X|1|A|G|480
7M4X|1|A|A|481
7M4X|1|A|A|482
7M4X|1|A|C|483
*
7M4X|1|A|G|495
7M4X|1|A|A|496
7M4X|1|A|G|497
7M4X|1|A|U|498
7M4X|1|A|G|499
7M4X|1|A|A|500
7M4X|1|A|A|501
7M4X|1|A|A|502
7M4X|1|A|U|503
7M4X|1|A|A|504
7M4X|1|A|G|505
7M4X|1|A|A|506
7M4X|1|A|U|507
7M4X|1|A|C|508

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24