IL_7M4X_086

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4X_086 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.2786

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7M4X|1|A|A|2455
7M4X|1|A|U|2456
7M4X|1|A|A|2457
*
7M4X|1|A|U|2485
7M4X|1|A|G|2486
7M4X|1|A|U|2487
7M4X|1|A|U|2488
7M4X|1|A|U|2489

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain V

50S ribosomal protein L27