IL_7M4X_177

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAA*UCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M4X_177 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.35

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7M4X|1|v|C|51
7M4X|1|v|A|52
7M4X|1|v|A|53
*
7M4X|1|v|U|63
7M4X|1|v|C|64
7M4X|1|v|G|65

Current chains

Chain v

tRNA-met

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain L

50S ribosomal protein L16

Chain V

50S ribosomal protein L27