IL_7M5D_001
3D structure
- PDB id
- 7M5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7M5D_001 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.1146
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7M5D|1|1|G|24
7M5D|1|1|U|25
7M5D|1|1|G|26
7M5D|1|1|G|27
7M5D|1|1|A|28
7M5D|1|1|U|29
7M5D|1|1|G|30
*
7M5D|1|1|C|510
7M5D|1|1|U|511
7M5D|1|1|G|512
7M5D|1|1|A|513
7M5D|1|1|A|514
7M5D|1|1|A|515
7M5D|1|1|C|516
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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