3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_009 not in the Motif Atlas
Geometric match to IL_5J7L_253
Geometric discrepancy: 0.2501
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

7M5D|1|1|C|274
7M5D|1|1|C|275
7M5D|1|1|U|276
7M5D|1|1|G|277
7M5D|1|1|A|278
7M5D|1|1|A|279
7M5D|1|1|U|280
7M5D|1|1|C|281
*
7M5D|1|1|G|359
7M5D|1|1|U|360
7M5D|1|1|G|361
7M5D|1|1|A|362
7M5D|1|1|G|363

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2289 s