IL_7M5D_009

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_009 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.2501

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7M5D|1|1|C|274
7M5D|1|1|C|275
7M5D|1|1|U|276
7M5D|1|1|G|277
7M5D|1|1|A|278
7M5D|1|1|A|279
7M5D|1|1|U|280
7M5D|1|1|C|281
*
7M5D|1|1|G|359
7M5D|1|1|U|360
7M5D|1|1|G|361
7M5D|1|1|A|362
7M5D|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains