3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
7M5D|1|1|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_034 not in the Motif Atlas
Geometric match to IL_5J7L_279
Geometric discrepancy: 0.1401
The information below is about IL_5J7L_279
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7M5D|1|1|G|1011
7M5D|1|1|U|1012
7M5D|1|1|C|1013
*
7M5D|1|1|G|1149
7M5D|1|1|C|1150

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.305 s