3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGUU*AC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_045 not in the Motif Atlas
Geometric match to IL_4V9F_008
Geometric discrepancy: 0.1296
The information below is about IL_4V9F_008
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

7M5D|1|1|G|1310
7M5D|1|1|G|1311
7M5D|1|1|U|1312
7M5D|1|1|U|1313
*
7M5D|1|1|A|1603
7M5D|1|1|C|1604

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain T
50S ribosomal protein L23
Chain d
50S ribosomal protein L34

Coloring options:


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