3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAA*UCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_060 not in the Motif Atlas
Geometric match to IL_4WF9_063
Geometric discrepancy: 0.1266
The information below is about IL_4WF9_063
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_67095.2
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

7M5D|1|1|G|1663
7M5D|1|1|A|1664
7M5D|1|1|A|1665
*
7M5D|1|1|U|1995
7M5D|1|1|C|1996
7M5D|1|1|C|1997

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19

Coloring options:


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