3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
7M5D|1|1|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_063 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.0891
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

7M5D|1|1|C|1686
7M5D|1|1|G|1687
7M5D|1|1|U|1688
7M5D|1|1|A|1689
7M5D|1|1|A|1690
7M5D|1|1|C|1691
*
7M5D|1|1|G|1696
7M5D|1|1|G|1697
7M5D|1|1|A|1698
7M5D|1|1|G|1699
7M5D|1|1|A|1700
7M5D|1|1|A|1701
7M5D|1|1|G|1702

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L2

Coloring options:


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