IL_7M5D_072

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_072 not in the Motif Atlas

Geometric match to IL_5J7L_317

Geometric discrepancy: 0.1159

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7M5D|1|1|U|1864
7M5D|1|1|U|1865
7M5D|1|1|A|1866
7M5D|1|1|G|1867
*
7M5D|1|1|C|1874
7M5D|1|1|G|1875
7M5D|1|1|A|1876
7M5D|1|1|A|1877
7M5D|1|1|G|1878

Current chains

Chain 1

23S ribosomal RNA

Nearby chains