3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UUAG*CGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_072 not in the Motif Atlas
Geometric match to IL_5J7L_317
Geometric discrepancy: 0.1159
The information below is about IL_5J7L_317
Detailed Annotation
UAA/GAN variation
Broad Annotation
No text annotation
Motif group
IL_77691.5
Basepair signature
cWW-tSH-L-R-L-cWW
Number of instances in this motif group
7

Unit IDs

7M5D|1|1|U|1864
7M5D|1|1|U|1865
7M5D|1|1|A|1866
7M5D|1|1|G|1867
*
7M5D|1|1|C|1874
7M5D|1|1|G|1875
7M5D|1|1|A|1876
7M5D|1|1|A|1877
7M5D|1|1|G|1878

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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