3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
ACG*CUAU
Length
7 nucleotides
Bulged bases
7M5D|1|1|C|2055, 7M5D|1|1|U|2613, 7M5D|1|1|A|2614
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_076 not in the Motif Atlas
Geometric match to IL_5J7L_321
Geometric discrepancy: 0.1305
The information below is about IL_5J7L_321
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83389.2
Basepair signature
cWW-cWW
Number of instances in this motif group
5

Unit IDs

7M5D|1|1|A|2054
7M5D|1|1|C|2055
7M5D|1|1|G|2056
*
7M5D|1|1|C|2612
7M5D|1|1|U|2613
7M5D|1|1|A|2614
7M5D|1|1|U|2615

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:


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