3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CCC*G(2MG)G
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_077 not in the Motif Atlas
Geometric match to IL_5VCI_005
Geometric discrepancy: 0.1181
The information below is about IL_5VCI_005
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_64417.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
18

Unit IDs

7M5D|1|1|C|2064
7M5D|1|1|C|2065
7M5D|1|1|C|2066
*
7M5D|1|1|G|2444
7M5D|1|1|2MG|2445
7M5D|1|1|G|2446

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain 6
FME-PHE-PHE
Chain D
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:


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