3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
7M5D|1|1|G|2238
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_080 not in the Motif Atlas
Geometric match to IL_5J7L_325
Geometric discrepancy: 0.1233
The information below is about IL_5J7L_325
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

7M5D|1|1|U|2081
7M5D|1|1|A|2082
7M5D|1|1|G|2083
*
7M5D|1|1|U|2236
7M5D|1|1|G|2237
7M5D|1|1|G|2238
7M5D|1|1|G|2239

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain X
50S ribosomal protein L28

Coloring options:


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