IL_7M5D_091
3D structure
- PDB id
- 7M5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(PSU)GA*UGG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7M5D_091 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.3273
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
7M5D|1|1|C|2456
7M5D|1|1|PSU|2457
7M5D|1|1|G|2458
7M5D|1|1|A|2459
*
7M5D|1|1|U|2493
7M5D|1|1|G|2494
7M5D|1|1|G|2495
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- Peptide chain release factor 1
- Chain M
- 50S ribosomal protein L16
Coloring options: