3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
C(PSU)GA*UGG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7M5D_091 not in the Motif Atlas
Geometric match to IL_7RQB_093
Geometric discrepancy: 0.3273
The information below is about IL_7RQB_093
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_63450.2
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
8

Unit IDs

7M5D|1|1|C|2456
7M5D|1|1|PSU|2457
7M5D|1|1|G|2458
7M5D|1|1|A|2459
*
7M5D|1|1|U|2493
7M5D|1|1|G|2494
7M5D|1|1|G|2495

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain A
Peptide chain release factor 1
Chain M
50S ribosomal protein L16

Coloring options:


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