IL_7M5D_130

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_130 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1019

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7M5D|1|2|U|409
7M5D|1|2|G|410
7M5D|1|2|A|411
7M5D|1|2|A|412
7M5D|1|2|G|413
7M5D|1|2|A|414
7M5D|1|2|A|415
7M5D|1|2|G|416
*
7M5D|1|2|U|427
7M5D|1|2|G|428
7M5D|1|2|U|429
7M5D|1|2|A|430
7M5D|1|2|A|431
7M5D|1|2|A|432
7M5D|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4