IL_7M5D_132

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7M5D|1|2|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_132 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.0861

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7M5D|1|2|G|446
7M5D|1|2|G|447
7M5D|1|2|A|448
7M5D|1|2|G|449
7M5D|1|2|G|450
*
7M5D|1|2|C|483
7M5D|1|2|G|484
7M5D|1|2|U|485
7M5D|1|2|U|486
7M5D|1|2|A|487
7M5D|1|2|C|488

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 7

Peptide chain release factor 3

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16