IL_7M5D_134

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_134 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.085

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7M5D|1|2|C|504
7M5D|1|2|G|505
7M5D|1|2|G|506
7M5D|1|2|C|507
7M5D|1|2|U|508
7M5D|1|2|A|509
7M5D|1|2|A|510
7M5D|1|2|C|511
*
7M5D|1|2|G|540
7M5D|1|2|G|541

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12