IL_7M5D_136

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7M5D|1|2|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_136 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1377

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7M5D|1|2|C|569
7M5D|1|2|G|570
7M5D|1|2|U|571
7M5D|1|2|A|572
7M5D|1|2|A|573
7M5D|1|2|A|574
7M5D|1|2|G|575
*
7M5D|1|2|C|880
7M5D|1|2|G|881

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S8

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17