IL_7M5D_155

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGUU*AAUGUGCCUUCGGGAAC

Length

23 nucleotides

Bulged bases

7M5D|1|2|U|1030, 7M5D|1|2|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7M5D_155 not in the Motif Atlas

Geometric match to IL_5J7L_045

Geometric discrepancy: 0.3385

The information below is about IL_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13394.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

7M5D|1|2|G|1003
7M5D|1|2|A|1004
7M5D|1|2|A|1005
7M5D|1|2|G|1006
7M5D|1|2|U|1007
7M5D|1|2|U|1008
*
7M5D|1|2|A|1021
7M5D|1|2|A|1022
7M5D|1|2|U|1023
7M5D|1|2|G|1024
7M5D|1|2|U|1025
7M5D|1|2|G|1026
7M5D|1|2|C|1027
7M5D|1|2|C|1028
7M5D|1|2|U|1029
7M5D|1|2|U|1030
7M5D|1|2|C|1031
7M5D|1|2|G|1032
7M5D|1|2|G|1033
7M5D|1|2|G|1034
7M5D|1|2|A|1035
7M5D|1|2|A|1036
7M5D|1|2|C|1037

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14