IL_7MD7_188

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MD7_188 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.102

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

7MD7|1|2A|U|293
7MD7|1|2A|A|294
7MD7|1|2A|G|295
*
7MD7|1|2A|C|343
7MD7|1|2A|G|344
7MD7|1|2A|A|345
7MD7|1|2A|A|346
7MD7|1|2A|A|347

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Y

50S ribosomal protein L24