IL_7MD7_214

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

7MD7|1|2A|U|1142, 7MD7|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MD7_214 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.0667

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7MD7|1|2A|C|1018
7MD7|1|2A|U|1019
7MD7|1|2A|A|1020
7MD7|1|2A|A|1021
7MD7|1|2A|G|1022
7MD7|1|2A|U|1023
7MD7|1|2A|G|1024
*
7MD7|1|2A|C|1140
7MD7|1|2A|U|1141
7MD7|1|2A|U|1142
7MD7|1|2A|A|1142|||A
7MD7|1|2A|A|1143
7MD7|1|2A|G|1144

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2N

50S ribosomal protein L13