IL_7MD7_311
3D structure
- PDB id
- 7MD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 7MD7|1|2a|A|572
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MD7_311 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.099
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
7MD7|1|2a|C|569
7MD7|1|2a|G|570
7MD7|1|2a|U|571
7MD7|1|2a|A|572
7MD7|1|2a|A|573
7MD7|1|2a|A|574
7MD7|1|2a|G|575
*
7MD7|1|2a|C|880
7MD7|1|2a|G|881
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2e
- 30S ribosomal protein S5
- Chain 2l
- 30S ribosomal protein S12
- Chain 2q
- 30S ribosomal protein S17
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