IL_7MD7_320

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

7MD7|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MD7_320 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1493

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

7MD7|1|2a|G|683
7MD7|1|2a|A|684
7MD7|1|2a|G|685
7MD7|1|2a|U|686
7MD7|1|2a|A|687
7MD7|1|2a|G|688
*
7MD7|1|2a|C|699
7MD7|1|2a|G|700
7MD7|1|2a|C|701
7MD7|1|2a|A|702
7MD7|1|2a|G|703
7MD7|1|2a|A|704
7MD7|1|2a|U|705
7MD7|1|2a|A|706
7MD7|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11