IL_7MDZ_023

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

7MDZ|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_023 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.3147

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7MDZ|1|5|G|481
7MDZ|1|5|C|481|||A
7MDZ|1|5|G|482
*
7MDZ|1|5|C|672
7MDZ|1|5|C|673

Current chains

Chain 5

28S rRNA

Nearby chains

Chain r

eL28