IL_7MDZ_027

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

7MDZ|1|5|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_027 not in the Motif Atlas

Geometric match to IL_2H1M_003

Geometric discrepancy: 0.3238

The information below is about IL_2H1M_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7MDZ|1|5|G|496
7MDZ|1|5|G|497
7MDZ|1|5|C|498
7MDZ|1|5|G|499
*
7MDZ|1|5|C|656
7MDZ|1|5|C|657
7MDZ|1|5|C|658

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4