IL_7MDZ_032

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

7MDZ|1|5|G|729, 7MDZ|1|5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_032 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.1116

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7MDZ|1|5|C|727
7MDZ|1|5|U|728
7MDZ|1|5|G|729
7MDZ|1|5|G|730
7MDZ|1|5|G|731
*
7MDZ|1|5|C|938
7MDZ|1|5|G|939

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a