IL_7MDZ_033

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

7MDZ|1|5|A|932, 7MDZ|1|5|A|935, 7MDZ|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|A|732
7MDZ|1|5|A|733
7MDZ|1|5|G|734
7MDZ|1|5|G|735
*
7MDZ|1|5|C|928
7MDZ|1|5|A|929
7MDZ|1|5|G|930
7MDZ|1|5|C|931
7MDZ|1|5|A|932
7MDZ|1|5|G|933
7MDZ|1|5|C|934
7MDZ|1|5|A|935
7MDZ|1|5|G|935|||A
7MDZ|1|5|C|936
7MDZ|1|5|U|937

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a