IL_7MDZ_042

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_042 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.2466

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7MDZ|1|5|C|1097
7MDZ|1|5|G|1098
*
7MDZ|1|5|C|1197
7MDZ|1|5|G|1198
7MDZ|1|5|G|1199

Current chains

Chain 5

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L18a

Chain T

eL21