3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MDZ_054 not in the Motif Atlas
Geometric match to IL_4V9F_027
Geometric discrepancy: 0.0926
The information below is about IL_4V9F_027
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

7MDZ|1|5|C|1551
7MDZ|1|5|G|1552
7MDZ|1|5|A|1553
7MDZ|1|5|A|1554
7MDZ|1|5|G|1555
*
7MDZ|1|5|U|1572
7MDZ|1|5|G|1573
7MDZ|1|5|G|1574
7MDZ|1|5|A|1575
7MDZ|1|5|G|1576

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
Ribosomal protein L8
Chain R
Ribosomal protein L19
Chain p
eL43

Coloring options:


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