IL_7MDZ_056

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7MDZ|1|5|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MDZ_056 not in the Motif Atlas

Homologous match to IL_8C3A_035

Geometric discrepancy: 0.0733

The information below is about IL_8C3A_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7MDZ|1|5|C|1590
7MDZ|1|5|U|1591
7MDZ|1|5|G|1592
*
7MDZ|1|5|C|1603
7MDZ|1|5|G|1604

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain j

Ribosomal protein L37